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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs1535406 chr14:23199690 A/G 2.24E-6 490 15.27 17.03 21.67 KM Plot
THCA rs1537848 chr1:156929594 T/C 2.15E-6 486 16.6 15.68 11.48 KM Plot
THCA rs1542752 chr17:72938100 C/T 0.000105 490 15.9 16.4 12.7 KM Plot
THCA rs1544405 chr16:20834571 T/C 9.16E-5 490 16.37 14.7 17.65 KM Plot
THCA rs1552515 chr11:6354524 G/A 7.17E-5 485 11.67 17.73 15.33 KM Plot
THCA rs1552516 chr11:6351787 A/T 4.0E-5 482 8.75 17.83 15.27 KM Plot
THCA rs1558813 chr16:50139799 T/C 0.000196 483 14.83 16.62 15.63 KM Plot
THCA rs1559518 chr2:86300331 T/A 4.03E-6 486 17.45 15.82 15.93 KM Plot
THCA rs1567169 chr6:79483933 C/T 2.23E-6 484 18.8 17.6 15.63 KM Plot
THCA rs1572409 chr1:156928776 A/T 2.15E-6 486 16.6 15.68 11.48 KM Plot
THCA rs1572413 chr1:156963975 G/A 2.63E-6 489 16.63 15.3 12.67 KM Plot
THCA rs1572414 chr1:156963874 T/C 2.63E-6 489 16.63 15.3 12.67 KM Plot
THCA rs1577411 chr6:141725657 A/T 0.000321 489 33.97 14.72 15.9 KM Plot
THCA rs1578556 chr9:15855011 T/G 5.71E-5 489 14.7 15.98 15.93 KM Plot
THCA rs1602455 chr3:56541440 C/T 3.54E-6 490 16.73 12.7 8.47 KM Plot